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A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
A
abstract (Projects attribute)
abstract_text (Abstracts attribute)
(Projects attribute)
Abstracts (class in core.orms.nih_orm)
AbstractVector (class in core.orms.nih_orm)
activity (Projects attribute)
administering_ic (Projects attribute)
affiliation (Publications attribute)
application_id (Abstracts attribute)
(AbstractVector attribute)
(PhrVector attribute)
(Projects attribute)
application_id_1 (TextDuplicate attribute)
application_id_2 (TextDuplicate attribute)
application_type (Projects attribute)
arra_funded (Projects attribute)
AtomicS3File (class in core.luigihacks.s3)
author_list (Publications attribute)
author_name (Publications attribute)
award_notice_date (Projects attribute)
B
base_core_project_num (Projects attribute)
BatchClient (class in core.luigihacks.batchclient)
BatchJobException
bucket_keys (in module core.luigihacks.misctools)
budget_end (Projects attribute)
budget_start (Projects attribute)
C
category_id (Group attribute)
category_name (Group attribute)
category_shortname (Group attribute)
cfda_code (Projects attribute)
chunker() (in module nesta.core.batchables.nlp.tfidf.run)
city (Group attribute)
clean_and_tokenize() (in module packages.nlp_utils.preprocess)
clean_field_name() (in module packages.nih.collect_nih)
clean_text() (in module packages.nih.preprocess_nih)
ClinicalStudies (class in core.orms.nih_orm)
clinicalstudies (Projects attribute)
clinicaltrial_ids (Projects attribute)
clinicaltrial_titles (Projects attribute)
clinicaltrials_gov_id (ClinicalStudies attribute)
connect() (MySqlTarget method)
copy() (S3FS method)
core (module)
core.batchables (module)
core.batchables.examples.batch_example.run (module)
core.luigihacks (module)
core.luigihacks.batchclient (module)
core.luigihacks.misctools (module)
core.luigihacks.mysqldb (module)
core.luigihacks.s3 (module)
core.orms.meetup_orm (module)
core.orms.nih_orm (module)
core.routines (module)
core.routines.examples.db_example.db_example (module)
core.routines.examples.s3_example.s3_example (module)
core_project_num (Projects attribute)
core_project_number (ClinicalStudies attribute)
country (Group attribute)
(Publications attribute)
country_name (Group attribute)
create_marker_table() (MySqlTarget method)
created (Group attribute)
D
date (FinalTask attribute)
(InputData attribute)
(RootTask attribute)
(SomeTask attribute)
,
[1]
db_config (InputData attribute)
description (Group attribute)
detect_and_split() (in module packages.nih.preprocess_nih)
direct_cost_amt (Projects attribute)
du() (S3FS method)
E
ed_inst_type (Projects attribute)
exists() (MySqlTarget method)
(S3FS method)
expand_prefix_list (in module packages.nih.preprocess_nih)
extract_date() (in module packages.format_utils.datetools)
extract_task_info (in module core.luigihacks.misctools)
extract_year() (in module packages.format_utils.datetools)
F
f3p() (in module core.luigihacks.misctools)
filter_by_idf() (in module packages.nlp_utils.preprocess)
FinalTask (class in core.routines.examples.s3_example.s3_example)
find_filepath_from_pathstub() (in module core.luigihacks.misctools)
foa_number (Projects attribute)
fs (S3Target attribute)
full_project_num (Projects attribute)
funding_ics (Projects attribute)
funding_mechanism (Projects attribute)
fy (Projects attribute)
G
generate_composite_key() (in module packages.geo_utils.geocode)
geocode (in module packages.geo_utils.geocode)
geocode_batch_dataframe() (in module packages.geo_utils.geocode)
geocode_dataframe() (in module packages.geo_utils.geocode)
get_active_queue() (BatchClient method)
get_config() (in module core.luigihacks.misctools)
get_data_urls() (in module packages.nih.collect_nih)
get_date_cols (in module packages.nih.preprocess_nih)
get_job_id_from_name() (BatchClient method)
get_job_status() (BatchClient method)
get_json_cols (in module packages.nih.preprocess_nih)
get_logs() (BatchClient method)
get_long_text_cols (in module packages.nih.preprocess_nih)
get_paths_from_relative() (in module core.luigihacks.misctools)
getattr_() (in module core.orms.nih_orm)
Group (class in core.orms.meetup_orm)
group_id (GroupMember attribute)
group_urlname (GroupMember attribute)
GroupMember (class in core.orms.meetup_orm)
H
hard_terminate() (BatchClient method)
I
ic_name (Projects attribute)
id (Group attribute)
in_db_config (SomeTask attribute)
indirect_cost_amt (Projects attribute)
InputData (class in core.routines.examples.db_example.db_example)
(class in core.routines.examples.s3_example.s3_example)
is_nih_null() (in module packages.nih.preprocess_nih)
isdir() (S3FS method)
issn (Publications attribute)
iterrows() (in module packages.nih.collect_nih)
J
journal_issue (Publications attribute)
journal_title (Publications attribute)
journal_title_abbr (Publications attribute)
journal_volume (Publications attribute)
L
lang (Publications attribute)
lat (Group attribute)
LinkTables (class in core.orms.nih_orm)
listdir() (S3FS method)
load_batch_config() (in module core.luigihacks.misctools)
load_transformer() (in module packages.decorators.schema_transform)
load_yaml_from_pathstub() (in module core.luigihacks.misctools)
lon (Group attribute)
M
make_mysql_target() (in module core.luigihacks.mysqldb)
marker_table (MySqlTarget attribute)
max_age (SomeTask attribute)
member_id (GroupMember attribute)
members (Group attribute)
merge_dicts() (in module core.luigihacks.s3)
merge_lists() (in module nesta.core.batchables.nlp.vectorizer.run)
mkdir() (S3FS method)
move() (S3FS method)
move_to_final_destination() (AtomicS3File method)
MySqlTarget (class in core.luigihacks.mysqldb)
N
name (Group attribute)
nesta.core.batchables.nlp.corex_topic_model.run (module)
nesta.core.batchables.nlp.tfidf.run (module)
nesta.core.batchables.nlp.vectorizer.run (module)
nih_spending_cats (Projects attribute)
O
open() (S3Target method)
optional() (in module nesta.core.batchables.nlp.vectorizer.run)
org_city (Projects attribute)
org_country (Projects attribute)
org_dept (Projects attribute)
org_district (Projects attribute)
org_duns (Projects attribute)
org_fips (Projects attribute)
org_ipf_code (Projects attribute)
org_name (Projects attribute)
org_state (Projects attribute)
org_zipcode (Projects attribute)
out_db_config (SomeTask attribute)
output() (FinalTask method)
(InputData method)
,
[1]
(SomeTask method)
,
[1]
P
packages (module)
packages.decorators.ratelimit (module)
packages.decorators.schema_transform (module)
packages.format_utils.datetools (module)
packages.geo_utils.geocode (module)
packages.nih.collect_nih (module)
packages.nih.preprocess_nih (module)
packages.nih.process_nih (module)
packages.nlp_utils.preprocess (module)
page_number (Publications attribute)
parse_date() (in module packages.nih.preprocess_nih)
parse_s3_path() (in module core.luigihacks.s3)
patent_id (Patents attribute)
patent_ids (Projects attribute)
patent_org_name (Patents attribute)
patent_title (Patents attribute)
patent_titles (Projects attribute)
Patents (class in core.orms.nih_orm)
patents (Projects attribute)
phr (Projects attribute)
PhrVector (class in core.orms.nih_orm)
pi_ids (Projects attribute)
pi_names (Projects attribute)
pmc_id (Publications attribute)
pmid (LinkTables attribute)
(Publications attribute)
pmids (Projects attribute)
preprocess_row() (in module packages.nih.preprocess_nih)
program_officer_name (Projects attribute)
project_end (Projects attribute)
project_id (Patents attribute)
project_number (LinkTables attribute)
project_start (Projects attribute)
project_terms (Projects attribute)
project_title (Projects attribute)
Projects (class in core.orms.nih_orm)
pub_date (Publications attribute)
pub_title (Publications attribute)
pub_year (Publications attribute)
Publications (class in core.orms.nih_orm)
publications (Projects attribute)
R
ratelimit() (in module packages.decorators.ratelimit)
register_job_definition() (BatchClient method)
remove() (S3FS method)
remove_generic_suffixes() (in module packages.nih.preprocess_nih)
remove_large_spaces() (in module packages.nih.preprocess_nih)
remove_trailing_exclamation() (in module packages.nih.preprocess_nih)
remove_unspecified_unicode() (in module packages.nih.preprocess_nih)
replace_question_with_best_guess() (in module packages.nih.preprocess_nih)
requires() (FinalTask method)
(RootTask method)
(SomeTask method)
,
[1]
retry_if_not_value_error() (in module packages.geo_utils.geocode)
RootTask (class in core.routines.examples.db_example.db_example)
run() (FinalTask method)
(InputData method)
(SomeTask method)
,
[1]
(in module core.batchables.examples.batch_example.run)
(in module nesta.core.batchables.nlp.corex_topic_model.run)
(in module nesta.core.batchables.nlp.tfidf.run)
(in module nesta.core.batchables.nlp.vectorizer.run)
S
S3FS (class in core.luigihacks.s3)
S3Target (class in core.luigihacks.s3)
schema_transform() (in module packages.decorators.schema_transform)
schema_transformer() (in module packages.decorators.schema_transform)
serial_number (Projects attribute)
SomeTask (class in core.routines.examples.db_example.db_example)
(class in core.routines.examples.s3_example.s3_example)
split_and_clean() (in module packages.nih.preprocess_nih)
study (ClinicalStudies attribute)
study_section (Projects attribute)
study_section_name (Projects attribute)
study_status (ClinicalStudies attribute)
submit_job() (BatchClient method)
subproject_id (Projects attribute)
suffix (Projects attribute)
support_year (Projects attribute)
T
term_counts() (in module nesta.core.batchables.nlp.vectorizer.run)
terminate_job() (BatchClient method)
text_field (TextDuplicate attribute)
TextDuplicate (class in core.orms.nih_orm)
timestamp (Group attribute)
tokenize_document() (in module packages.nlp_utils.preprocess)
topics (Group attribute)
total_cost (Projects attribute)
total_cost_sub_project (Projects attribute)
touch() (MySqlTarget method)
U
upper_to_title() (in module packages.nih.preprocess_nih)
urlname (Group attribute)
V
vector (AbstractVector attribute)
(PhrVector attribute)
W
wait_on_job() (BatchClient method)
weight (TextDuplicate attribute)
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